Payroll Management Software
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Simplify Payroll Processing With ClinicTracker
Managing payroll reimbursements for your clinical staff can be complex, but ClinicTracker’s Payroll Management software makes it simple. Because ClinicTracker already tracks billing data for services provided, you can easily calculate staff reimbursements based on predefined rules with the payroll software — eliminating manual data entry and reducing administrative burden.
The more clinic functions are integrated into one solution, the less time you waste re-inputting data, dealing with multiple software packages, or worrying about errors.


Flexible Payroll Rules To Fit Your Business Needs
ClinicTracker simplifies your payroll processing in several ways. With this powerful module, you can immediately determine your payroll expenses for any period of time you select. You can manage payroll pay periods, configure payroll reimbursements, and generate payroll reports effortlessly. Because ClinicTracker already knows what's been billed, you just need to initially configure how each of the providers gets reimbursed for each of the services.
When setting up payroll reimbursements, you have four flexible options:
- Percentage of Billed Amount: Pay a percentage of what was billed for services
- Percentage of Collected Amount: Pay based on actual collections
- Fixed Amount Per Service: Assign a set reimbursement per service
- Fixed Amount Per Unit: Pay based on time-based units or other metrics
Automate Payroll Calculations in Just a Few Clicks
With ClinicTracker’s intuitive payroll system, you can:
- Choose the pay period you want to review
- Retrieve payroll data from a selected date range
- Select a previously configured pay period or create a new one
- Mark payroll items as paid to track reimbursements easily


Seamless Data for Your Payroll System
While ClinicTracker does not handle payroll tax filing, direct deposits, or paycheck distribution, it provides all the payroll data you need for your existing payroll management software. You can easily track reimbursements and export payroll details to your preferred payroll company for final processing. Whether you're using QuickBooks Online, Paychex Flex, or another full-service payroll provider, ClinicTracker keeps your payroll register up to date and with the essential data you need to efficiently manage and complete payroll.
With accurate records of staff payments, ClinicTracker helps you stay organized and compliant with local tax and reporting requirements. Whether running basic payroll for a small business or doing payroll services for complex business operations and multiple pay rates, using the right payroll solution pays dividends.
Save Time and Reduce Errors With ClinicTracker
ClinicTracker’s Payroll Management feature is designed for behavioral health practices that need an efficient, user-friendly solution for tracking payroll expenses. Instead of juggling multiple systems, you can run payroll calculations effortlessly, gain insights into your practice’s payroll data, and stay ahead of administrative tasks.
Watch our video to see this feature in action.